职称:副研究员
电子邮箱:xiongyi@sjtu.edu.cn
个人网页/课题组主页:https://xlab.sjtu.edu.cn/
教育背景
工作经历
研究方向
荣誉奖励/承担项目
代表性论文和著作
2006-2011 武汉大学 计算机应用技术专业 博士
2002-2006 武汉大学 软件工程专业 学士
2019-至今 上海交通大学 生命科学技术学院 副研究员
2014-2018 上海交通大学 生命科学技术学院 助理研究员
2012-2013 普渡大学 生物学系 博士后
生物信息学、人工智能
2022国家级青年人才计划入选者
Yanyi Chu, Yan Zhang, Qiankun Wang, Lingfeng Zhang, Xuhong Wang, Yanjing Wang, Dennis Russell Salahub, Qin Xu, Jianmin Wang, Xue Jiang, Yi Xiong*, Dong-Qing Wei*. A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design. Nature Machine Intelligence 2022, 4:300–311. (IF 23.8, ESI高被引论文)
Shenggeng Lin, Weizhi Chen, Gengwang Chen, Songchi Zhou, Dong-Qing Wei*, Yi Xiong*. MDDI-SCL: predicting multi-type drug-drug interactions via supervised contrastive learning. Journal of Cheminformatics 2022, 14:81.
Yanyi Chu, Aman Chandra Kaushik, Xiangeng Wang, Wei Wang, Yufang Zhang, Xiaoqi Shan, Dennis Russell Salahub, Yi Xiong*, Dong-Qing Wei*. DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features. Briefings in Bioinformatics 2021, 22(1):451–462. (ESI高被引论文)
Mingming Jiang, Bowen Zhao, Luosheng Gan, Qiankun Wang, Yanyi Chu, Tianhang Chen, Xueying Mao, Yatong Liu, Yanjing Wang, Xue Jiang, Dong-Qing Wei, Yi Xiong*. NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods. Briefings in Bioinformatics 22(6):bbab310. (2021, IF 11.622)
Yanyi Chu, Xiaoqi Shan, Tianhang Chen, Mingming Jiang, Yanjing Wang, Qiankun Wang, Dennis Russell Salahub, Yi Xiong*, Dong-Qing Wei*. DTI-MLCD: predicting drug-target interactions using multilabel learning with community detection method. Briefings in Bioinformatics 22(3):bbaa205. (2021, IF 11.622)