人工智能生物医药中心

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熊毅

  • 教育背景

  • 工作经历

  • 研究方向

  • 荣誉奖励/承担项目

  • 代表性论文和著作

  • 2006-2011   武汉大学 计算机应用技术专业  博士

  • 2002-2006   武汉大学 软件工程专业        学士

  • 2019-至今   上海交通大学 生命科学技术学院  副研究员

  • 2014-2018   上海交通大学 生命科学技术学院  助理研究员

  • 2012-2013   普渡大学 生物学系              博士后

  • 生物信息学、人工智能

  • 2022国家级青年人才计划入选者

  • Yanyi Chu, Yan Zhang, Qiankun Wang, Lingfeng Zhang, Xuhong Wang, Yanjing Wang, Dennis Russell Salahub, Qin Xu, Jianmin Wang, Xue Jiang, Yi Xiong*, Dong-Qing Wei*. A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design. Nature Machine Intelligence 2022, 4:300–311. (IF 23.8, ESI高被引论文)

  • Shenggeng Lin, Weizhi Chen, Gengwang Chen, Songchi Zhou, Dong-Qing Wei*, Yi Xiong*. MDDI-SCL: predicting multi-type drug-drug interactions via supervised contrastive learning. Journal of Cheminformatics 2022, 14:81.

  • Yanyi Chu, Aman Chandra Kaushik, Xiangeng Wang, Wei Wang, Yufang Zhang, Xiaoqi Shan, Dennis Russell Salahub, Yi Xiong*, Dong-Qing Wei*. DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features. Briefings in Bioinformatics 2021, 22(1):451–462. (ESI高被引论文)

  • Mingming Jiang, Bowen Zhao, Luosheng Gan, Qiankun Wang, Yanyi Chu, Tianhang Chen, Xueying Mao, Yatong Liu, Yanjing Wang, Xue Jiang, Dong-Qing Wei, Yi Xiong*. NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods. Briefings in Bioinformatics 22(6):bbab310. (2021, IF 11.622)

  • Yanyi Chu, Xiaoqi Shan, Tianhang Chen, Mingming Jiang, Yanjing Wang, Qiankun Wang, Dennis Russell Salahub, Yi Xiong*, Dong-Qing Wei*. DTI-MLCD: predicting drug-target interactions using multilabel learning with community detection method. Briefings in Bioinformatics 22(3):bbaa205. (2021, IF 11.622)