Yanyi Chu, Yan Zhang, Qiankun Wang, Lingfeng Zhang, Xuhong Wang, Yanjing Wang, Dennis Russell Salahub, Qin Xu, Jianmin Wang, Xue Jiang, Yi Xiong*, Dong-Qing Wei*. A transformer-based model to predict peptide-HLA class I binding and optimize mutated peptides for vaccine design. Nature Machine Intelligence 2022, 4:300–311. (IF 23.8, ESI高被引论文)

Shenggeng Lin, Weizhi Chen, Gengwang Chen, Songchi Zhou, Dong-Qing Wei*, Yi Xiong*. MDDI-SCL: predicting multi-type drug-drug interactions via supervised contrastive learning. Journal of Cheminformatics 2022, 14:81.

Yanyi Chu, Aman Chandra Kaushik, Xiangeng Wang, Wei Wang, Yufang Zhang, Xiaoqi Shan, Dennis Russell Salahub, Yi Xiong*, Dong-Qing Wei*. DTI-CDF: a cascade deep forest model towards the prediction of drug-target interactions based on hybrid features. Briefings in Bioinformatics 2021, 22(1):451–462. (ESI高被引论文)

Mingming Jiang, Bowen Zhao, Luosheng Gan, Qiankun Wang, Yanyi Chu, Tianhang Chen, Xueying Mao, Yatong Liu, Yanjing Wang, Xue Jiang, Dong-Qing Wei, Yi Xiong*. NeuroPpred-Fuse: an interpretable stacking model for prediction of neuropeptides by fusing sequence information and feature selection methods. Briefings in Bioinformatics 22(6):bbab310. (2021, IF 11.622)

Yanyi Chu, Xiaoqi Shan, Tianhang Chen, Mingming Jiang, Yanjing Wang, Qiankun Wang, Dennis Russell Salahub, Yi Xiong*, Dong-Qing Wei*. DTI-MLCD: predicting drug-target interactions using multilabel learning with community detection method. Briefings in Bioinformatics 22(3):bbaa205. (2021, IF 11.622)